Download CodonCode Aligner 7.0.1 software

Download CodonCode Aligner 7.0.1


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  • Fast, powerful & affordable sequence asembly, alignment, and mutation detection

    Whats new in version 7.0.1:

    • CodonCode Aligner version 5.0.1 can create Bowtie2 alignments and display paired end reads. Additional new features include moving multiple gaps with drag & drop, alignments with Clustal Omega, contig overview printing, and multiple speed and memory improvements for large projects and alignments. Bowtie2 Alignments:
    • In CodonCode Aligner you can now align your sequencing data with Bowtie2. Displaying Paired Ends:
    • Paired ends can be dislpayed for Bowtie2 alignments. They are shown in the contig overview and mate information for a read can be found in mouse overs. Improved gap movement:
    • Editing sample and contig gaps just got easier: You can now move more than one gap at the same time in CodonCode Aligner.
    • Aligner\' s contig view allows you to use drag and drop to move the gaps and gives instant visual feedback of the gap movement. Print the Contig Overview:
    • Print the contig overview to get a clearly arranged version of your contig and its samples. The overview can be printed for a c...

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    Rating: 3.7 out of 5
    Based on 7 ratings. 7 user reviews.

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    CodonCode Aligner 7.0.1 screenshot. Click to enlarge!

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